Things you haven't specified include:
- Where in the world would this operate - different jurisdictions have
legal and other limitations on transportation methods.
- Duration of the operation - rail would be one of the cheapest
systems, but with a high capital cost it would require a long operating
period.
- What transportation infrastructure exits in the locality - what can
be used and how much of it needs to be modified.
- Will the transportation be done mostly on private or public land.
- Is the locality remote? How many towns/habitated areas will the
transport system have to pass through? This will affect issues such
as dust and noise.
- Will there be curfew or other limits on the transport operations
which limit the transportation to specific time periods of the day,
or will it be a 24/7 operation.
- If roads are used will they be dirt or sealed roads - this again
affects dust and noise levels as well as speed limits, issues of
truck maintenance and fuel usage.
- Additionally, if roads are used, with they interact with regular
traffic in the region and how will this affect speed of
transportation and road safety?
- If trucks were to to be used, could local traffic easily overtake the
trucks if necessary?
Regarding conveyors, they have a lot of moving parts. The longer the conveyor the more moving parts, the greater the chance of something breaking down and shutting down the entire belt resulting in lost production.
Regarding drones, the technology isn't there yet.
If your are interested in automated technology look at what Rio Tinto is doing with it iron ore operations in Western Australia. In some mines loading and trucking is done via automated vehicles. Haulage trains, that are two or more kilometers long with multiple locomotives, that transport ore hundreds of kilometers to the coast are now done by driverless trains. For some things there are still remote operators who control certain vehicles from Perth, some two thousand kilometers away.
If your jurisdiction allow, consider using road trains; the longer the better. Multiple trailers with a single prime mover, all up to 55 meters in length is very common is some jurisdictions. The trailers would need to be either side casting or bottom dumping.
Trucks would be the most flexible option, whether single semi trailer or road train. For a long duration operation rail would be cheaper, overall.
Electrifying trains would reduce air pollution.
During the apartheid era of South Africa, when it had oil sanctions placed on it, the mine trucks at the Palabora copper mine would operate in-pit using diesel engines, but would haul out of the mine to the processing plant using overhead trolley wire assist. If you're adventurous it may be worth investigating using trolley wire assist for road train type vehicles. Then again, maybe Tesla electric trucks might be an option.
To reduce dust for both rail cars and road trains, the wagons and trailers can have covers placed over them.
For something totally different, in mountainous area, areal ropeways, as used at the Grasberg mine, in West Papua, Indonesia, may provide inspiration.
Realistically, I thing the two main options to consider would be trucks, including road trains, or rail.